Discussion of MongoDB and its sponsoring company 10gen.
It’s difficult to project the rate of IT change in health care, because:
- Health care is suffused with technology — IT, medical device and biotech alike — and hence has the potential for rapid change. However, it is also the case that …
- … health care is heavily bureaucratic, political and regulated.
Timing aside, it is clear that health care change will be drastic. The IT part of that starts with vastly comprehensive electronic health records, which will be accessible (in part or whole as the case may be) by patients, care givers, care payers and researchers alike. I expect elements of such records to include:
- The human-generated part of what’s in ordinary paper health records today, but across a patient’s entire lifetime. This of course includes notes created by doctors and other care-givers.
- Large amounts of machine-generated data, including:
- The results of clinical tests. Continued innovation can be expected in testing, for reasons that include:
- Most tests exploit electronic technology. Progress in electronics is intense.
- Biomedical research is itself intense.
- In particular, most research technologies (for example gene sequencing) can be made cheap enough over time to be affordable clinically.
- The output of consumer health-monitoring devices — e.g. Fitbit and its successors. The buzzword here is “quantified self”, but what it boils down to is that every moment of our lives will be measured and recorded.
- The results of clinical tests. Continued innovation can be expected in testing, for reasons that include:
These vastly greater amounts of data cited above will allow for greatly changed analytics.
Over the past couple years, there have been various quick comments and vague press releases about “BI for NoSQL”. I’ve had trouble, however, imagining what it could amount to that was particularly interesting, with my confusion boiling down to “Just what are you aggregating over what?” Recently I raised the subject with a few leading NoSQL companies. The result is that my confusion was expanded. Here’s the small amount that I have actually figured out.
As I noted in a recent post about data models, many databases — in particular SQL and NoSQL ones — can be viewed as collections of <name, value> pairs.
- In a relational database, a record is a collection of <name, value> pairs with a particular and predictable — i.e. derived from the table definition — sequence of names. Further, a record usually has an identifying key (commonly one of the first values).
- Something similar can be said about structured-document stores — i.e. JSON or XML — except that the sequence of names may not be consistent from one document to the next. Further, there’s commonly a hierarchical relationship among the names.
- For these purposes, a “wide-column” NoSQL store like Cassandra or HBase can be viewed much as a structured-document store, albeit with different performance optimizations and characteristics and a different flavor of DML (Data Manipulation Language).
Consequently, a NoSQL database can often be viewed as a table or a collection of tables, except that:
- The NoSQL database is likely to have more null values.
- The NoSQL database, in a naive translation toward relational, may have repeated values. So a less naive translation might require extra tables.
That’s all straightforward to deal with if you’re willing to write scripts to extract the NoSQL data and transform or aggregate it as needed. But things get tricky when you try to insist on some kind of point-and-click. And by the way, that last comment pertains to BI and ETL (Extract/Transform/Load) alike. Indeed, multiple people I talked with on this subject conflated BI and ETL, and they were probably right to do so.
|Categories: Business intelligence, Cassandra, EAI, EII, ETL, ELT, ETLT, HBase, MongoDB, NoSQL, Structured documents||5 Comments|
7-10 years ago, I repeatedly argued the viewpoints:
- Relational DBMS were the right choice in most cases.
- Multiple kinds of relational DBMS were needed, optimized for different kinds of use case.
- There were a variety of specialized use cases in which non-relational data models were best.
Since then, however:
- Hadoop has flourished.
- NoSQL has flourished.
- Graph DBMS have matured somewhat.
- Much of the action has shifted to machine-generated data, of which there are many kinds.
So it’s probably best to revisit all that in a somewhat organized way.
- Question: Why do policemen work in pairs?
- Answer: One to read and one to write.
A lot has happened in MongoDB technology over the past year. For starters:
- The big news in MongoDB 3.0* is the WiredTiger storage engine. The top-level claims for that are that one should “typically” expect (individual cases can of course vary greatly):
- 7-10X improvement in write performance.
- No change in read performance (which however was boosted in MongoDB 2.6).
- ~70% reduction in data size due to compression (disk only).
- ~50% reduction in index size due to compression (disk and memory both).
- MongoDB has been adding administration modules.
- A remote/cloud version came out with, if I understand correctly, MongoDB 2.6.
- An on-premise version came out with 3.0.
- They have similar features, but are expected to grow apart from each other over time. They have different names.
*Newly-released MongoDB 3.0 is what was previously going to be MongoDB 2.8. My clients at MongoDB finally decided to give a “bigger” release a new first-digit version number.
To forestall confusion, let me quickly add: Read more
|Categories: Database compression, Hadoop, Humor, In-memory DBMS, MongoDB, NoSQL, Open source, Structured documents, Sybase||7 Comments|
I hoped to write a reasonable overview of current- to medium-term future IT innovation. Yeah, right. But if we abandon any hope that this post could be comprehensive, I can at least say:
1. Back in 2011, I ranted against the term Big Data, but expressed more fondness for the V words — Volume, Velocity, Variety and Variability. That said, when it comes to data management and movement, solutions to the V problems have generally been sketched out.
- Volume has been solved. There are Hadoop installations with 100s of petabytes of data, analytic RDBMS with 10s of petabytes, general-purpose Exadata sites with petabytes, and 10s/100s of petabytes of analytic Accumulo at the NSA. Further examples abound.
- Velocity is being solved. My recent post on Hadoop-based streaming suggests how. In other use cases, velocity is addressed via memory-centric RDBMS.
- Variety and Variability have been solved. MongoDB, Cassandra and perhaps others are strong NoSQL choices. Schema-on-need is in earlier days, but may help too.
2. Even so, there’s much room for innovation around data movement and management. I’d start with:
- Product maturity is a huge issue for all the above, and will remain one for years.
- Hadoop and Spark show that application execution engines:
- Have a lot of innovation ahead of them.
- Are tightly entwined with data management, and with data movement as well.
- Hadoop is due for another refactoring, focused on both in-memory and persistent storage.
- There are many issues in storage that can affect data technologies as well, including but not limited to:
- Solid-state (flash or post-flash) vs. spinning disk.
- Networked vs. direct-attached.
- Virtualized vs. identifiable-physical.
- Graph analytics and data management are still confused.
I’m taking a few weeks defocused from work, as a kind of grandpaternity leave. That said, the venue for my Dances of Infant Calming is a small-but-nice apartment in San Francisco, so a certain amount of thinking about tech industries is inevitable. I even found time last Tuesday to meet or speak with my clients at WibiData, MemSQL, Cloudera, Citus Data, and MongoDB. And thus:
1. I’ve been sloppy in my terminology around “geo-distribution”, in that I don’t always make it easy to distinguish between:
- Storing different parts of a database in different geographies, often for reasons of data privacy regulatory compliance.
- Replicating an entire database into different geographies, often for reasons of latency and/or availability/ disaster recovery,
The latter case can be subdivided further depending on whether multiple copies of the data can accept first writes (aka active-active, multi-master, or multi-active), or whether there’s a clear single master for each part of the database.
What made me think of this was a phone call with MongoDB in which I learned that the limit on number of replicas had been raised from 12 to 50, to support the full-replication/latency-reduction use case.
2. Three years ago I posted about agile (predictive) analytics. One of the points was:
… if you change your offers, prices, ad placement, ad text, ad appearance, call center scripts, or anything else, you immediately gain new information that isn’t well-reflected in your previous models.
Subsequently I’ve been hearing more about predictive experimentation such as bandit testing. WibiData, whose views are influenced by a couple of Very Famous Department Store clients (one of which is Macy’s), thinks experimentation is quite important. And it could be argued that experimentation is one of the simplest and most direct ways to increase the value of your data.
3. I’d further say that a number of developments, trends or possibilities I’m seeing are or could be connected. These include agile and experimental predictive analytics in general, as noted in the previous point, along with: Read more
After visiting California recently, I made a flurry of posts, several of which generated considerable discussion.
- My claim that Spark will replace Hadoop MapReduce got much Twitter attention — including some high-profile endorsements — and also some responses here.
- My MemSQL post led to a vigorous comparison of MemSQL vs. VoltDB.
- My post on hardware and storage spawned a lively discussion of Hadoop hardware pricing; even Cloudera wound up disagreeing with what I reported Cloudera as having said. Sadly, there was less response to the part about the partial (!) end of Moore’s Law.
- My Cloudera/SQL/Impala/Hive apparently was well-balanced, in that it got attacked from multiple sides via Twitter & email. Apparently, I was too hard on Impala, I was too hard on Hive, and I was too hard on boxes full of cardboard file cards as well.
- My post on the Intel/Cloudera deal garnered a comment reminding us Dell had pushed the Intel distro.
- My CitusDB post picked up a few clarifying comments.
Here is a catch-all post to complete the set. Read more
I caught up with my clients at MongoDB to discuss the recent MongoDB 2.6, along with some new statements of direction. The biggest takeaway is that the MongoDB product, along with the associated MMS (MongoDB Management Service), is growing up. Aspects include:
- An actual automation and management user interface, as opposed to the current management style, which is almost entirely via scripts (except for the monitoring UI).
- That’s scheduled for public beta in May, and general availability later this year.
- It will include some kind of integrated provisioning with VMware, OpenStack, et al.
- One goal is to let you apply database changes, software upgrades, etc. without taking the cluster down.
- A reasonable backup strategy.
- A snapshot copy is made of the database.
- A copy of the log is streamed somewhere.
- Periodically — the default seems to be 6 hours — the log is applied to create a new current snapshot.
- For point-in-time recovery, you take the last snapshot prior to the point, and roll forward to the desired point.
- A reasonable locking strategy!
- Document-level locking is all-but-promised for MongoDB 2.8.
- That means what it sounds like. (I mention this because sometimes an XML database winds up being one big document, which leads to confusing conversations about what’s going on.)
- Security. My eyes glaze over at the details, but several major buzzwords have been checked off.
- A general code rewrite to allow for (more) rapid addition of future features.
Cassandra’s reputation in many quarters is:
- World-leading in the geo-distribution feature.
- Impressively scalable.
- Hard to use.
This has led competitors to use, and get away with, sales claims along the lines of “Well, if you really need geo-distribution and can’t wait for us to catch up — which we soon will! — you should use Cassandra. But otherwise, there are better choices.”
My friends at DataStax, naturally, don’t think that’s quite fair. And so I invited them — specifically Billy Bosworth and Patrick McFadin — to educate me. Here are some highlights of that exercise.
DataStax and Cassandra have some very impressive accounts, which don’t necessarily revolve around geo-distribution. Netflix, probably the flagship Cassandra user — since Cassandra inventor Facebook adopted HBase instead — actually hasn’t been using the geo-distribution feature. Confidential accounts include:
- A petabyte or so of data at a very prominent company, geo-distributed, with 800+ nodes, in a kind of block storage use case.
- A messaging application at a very prominent company, anticipated to grow to multiple data centers and a petabyte of so of data, across 1000s of nodes.
- A 300 terabyte single-data-center telecom account (which I can’t find on DataStax’s extensive customer list).
- A huge health records deal.
- A Fortune 10 company.
DataStax and Cassandra won’t necessarily win customer-brag wars versus MongoDB, Couchbase, or even HBase, but at least they’re strongly in the competition.
DataStax claims that simplicity is now a strength. There are two main parts to that surprising assertion. Read more
|Categories: Cassandra, Clustering, Couchbase, Data models and architecture, DataStax, Facebook, HBase, Health care, Log analysis, Market share and customer counts, MongoDB, NoSQL, Petabyte-scale data management, Specific users||10 Comments|
There’s a growing trend for DBMS to beef up their support for multiple data manipulation languages (DMLs) or APIs — and there’s a special boom in JSON support, MongoDB-compatible or otherwise. So I talked earlier tonight with IBM’s Bobbie Cochrane about how JSON is managed in DB2.
For starters, let’s note that there are at least four strategies IBM could have used.
- Store JSON in a BLOB (Binary Large OBject) or similar existing datatype. That’s what IBM actually chose.
- Store JSON in a custom datatype, using the datatype extensibility features DB2 has had since the 1990s. IBM is not doing this, and doesn’t see a need to at this time.
- Use DB2 pureXML, along with some kind of JSON/XML translator. DB2 managed JSON this way in the past, via UDFs (User-Defined Functions), but that implementation is superseded by the new BLOB-based approach, which offers better performance in ingest and query alike.
- Shred — to use a term from XML days — JSON into a bunch of relational columns. IBM experimented with this approach, but ultimately rejected it. In dismissing shredding, Bobbie also disdained any immediate support for schema-on-need.
IBM’s technology choices are of course influenced by its use case focus. It’s reasonable to divide MongoDB use cases into two large buckets:
- Hardcore internet and/or machine-generated data, for example from a website.
- Enterprise data aggregation, for example a “360-degree customer view.”
IBM’s DB2 JSON features are targeted at the latter bucket. Also, I suspect that IBM is generally looking for a way to please users who enjoy working on and with their MongoDB skills. Read more
|Categories: Data models and architecture, IBM and DB2, MongoDB, NoSQL, pureXML, Structured documents||2 Comments|