Analysis of data management technology optimized for specific datatypes, such as text, geospatial, object, RDF, or XML. Related subjects include:
- Any subcategory
- Database diversity
It’s difficult to project the rate of IT change in health care, because:
- Health care is suffused with technology — IT, medical device and biotech alike — and hence has the potential for rapid change. However, it is also the case that …
- … health care is heavily bureaucratic, political and regulated.
Timing aside, it is clear that health care change will be drastic. The IT part of that starts with vastly comprehensive electronic health records, which will be accessible (in part or whole as the case may be) by patients, care givers, care payers and researchers alike. I expect elements of such records to include:
- The human-generated part of what’s in ordinary paper health records today, but across a patient’s entire lifetime. This of course includes notes created by doctors and other care-givers.
- Large amounts of machine-generated data, including:
- The results of clinical tests. Continued innovation can be expected in testing, for reasons that include:
- Most tests exploit electronic technology. Progress in electronics is intense.
- Biomedical research is itself intense.
- In particular, most research technologies (for example gene sequencing) can be made cheap enough over time to be affordable clinically.
- The output of consumer health-monitoring devices — e.g. Fitbit and its successors. The buzzword here is “quantified self”, but what it boils down to is that every moment of our lives will be measured and recorded.
- The results of clinical tests. Continued innovation can be expected in testing, for reasons that include:
These vastly greater amounts of data cited above will allow for greatly changed analytics.
I talked with my clients at MemSQL about the release of MemSQL 4.0. Let’s start with the reminders:
- MemSQL started out as in-memory OTLP (OnLine Transaction Processing) DBMS …
- … but quickly positioned with “We also do ‘real-time’ analytic processing” …
- … and backed that up by adding a flash-based column store option …
- … before Gartner ever got around to popularizing the term HTAP (Hybrid Transaction and Analytic Processing).
- There’s also a JSON option.
The main new aspects of MemSQL 4.0 are:
- Geospatial indexing. This is for me the most interesting part.
- A new optimizer and, I suppose, query planner …
- … which in particular allow for serious distributed joins.
- Some rather parallel-sounding connectors to Spark. Hadoop and Amazon S3.
- Usual-suspect stuff including:
- More SQL coverage (I forgot to ask for details).
- Some added or enhanced administrative/tuning/whatever tools (again, I forgot to ask for details).
- Surely some general Bottleneck Whack-A-Mole.
There’s also a new free MemSQL “Community Edition”. MemSQL hopes you’ll experiment with this but not use it in production. And MemSQL pricing is now wholly based on RAM usage, so the column store is quasi-free from a licensing standpoint is as well.
I’m going to be out-of-sorts this week, due to a colonoscopy. (Between the prep, the procedure, and the recovery, that’s a multi-day disablement.) In the interim, here’s a collection of links, quick comments and the like.
1. Are you an engineer considering a start-up? This post is for you. It’s based on my long experience in and around such scenarios, and includes a section on “Deadly yet common mistakes”.
2. There seems to be a lot of confusion regarding the business model at my clients Databricks. Indeed, my own understanding of Databricks’ on-premises business has changed recently. There are no changes in my beliefs that:
- Databricks does not directly license or support on-premises Spark users. Rather …
- … it helps partner companies to do so, where:
- Examples of partner companies include usual-suspect Hadoop distribution vendors, and DataStax.
- “Help” commonly includes higher-level support.
However, I now get the impression that revenue from such relationships is a bigger deal to Databricks than I previously thought.
Databricks, by the way, has grown to >50 people.
3. DJ Patil and Ruslan Belkin apparently had a great session on lessons learned, covering a lot of ground. Many of the points are worth reading, but one in particular echoed something I’m hearing lots of places — “Data is super messy, and data cleanup will always be literally 80% of the work.” Actually, I’d replace the “always” by something like “very often”, and even that mainly for newish warehouses, data marts or datasets. But directionally the comment makes a whole lot of sense.
|Categories: Data integration and middleware, Databricks, Spark and BDAS, DataStax, Hadoop, Health care, Investment research and trading, Text||Leave a Comment|
Indexes are central to database management.
- My first-ever stock analyst report, in 1982, correctly predicted that index-based DBMS would supplant linked-list ones …
- … and to this day, if one wants to retrieve a small fraction of a database, indexes are generally the most efficient way to go.
- Recently, I’ve had numerous conversations in which indexing strategies played a central role.
Perhaps it’s time for a round-up post on indexing.
1. First, let’s review some basics. Classically:
- An index is a DBMS data structure that you probe to discover where to find the data you really want.
- Indexes make data retrieval much more selective and hence faster.
- While indexes make queries cheaper, they make writes more expensive — because when you write data, you need to update your index as well.
- Indexes also induce costs in database size and administrative efforts. (Manual index management is often the biggest hurdle for “zero-DBA” RDBMS installations.)
2. Further: Read more
|Categories: Data warehousing, Database compression, GIS and geospatial, Google, MapReduce, McObject, MemSQL, MySQL, ScaleDB, solidDB, Sybase, Text, Tokutek and TokuDB||18 Comments|
Over the past couple years, there have been various quick comments and vague press releases about “BI for NoSQL”. I’ve had trouble, however, imagining what it could amount to that was particularly interesting, with my confusion boiling down to “Just what are you aggregating over what?” Recently I raised the subject with a few leading NoSQL companies. The result is that my confusion was expanded. Here’s the small amount that I have actually figured out.
As I noted in a recent post about data models, many databases — in particular SQL and NoSQL ones — can be viewed as collections of <name, value> pairs.
- In a relational database, a record is a collection of <name, value> pairs with a particular and predictable — i.e. derived from the table definition — sequence of names. Further, a record usually has an identifying key (commonly one of the first values).
- Something similar can be said about structured-document stores — i.e. JSON or XML — except that the sequence of names may not be consistent from one document to the next. Further, there’s commonly a hierarchical relationship among the names.
- For these purposes, a “wide-column” NoSQL store like Cassandra or HBase can be viewed much as a structured-document store, albeit with different performance optimizations and characteristics and a different flavor of DML (Data Manipulation Language).
Consequently, a NoSQL database can often be viewed as a table or a collection of tables, except that:
- The NoSQL database is likely to have more null values.
- The NoSQL database, in a naive translation toward relational, may have repeated values. So a less naive translation might require extra tables.
That’s all straightforward to deal with if you’re willing to write scripts to extract the NoSQL data and transform or aggregate it as needed. But things get tricky when you try to insist on some kind of point-and-click. And by the way, that last comment pertains to BI and ETL (Extract/Transform/Load) alike. Indeed, multiple people I talked with on this subject conflated BI and ETL, and they were probably right to do so.
|Categories: Business intelligence, Cassandra, EAI, EII, ETL, ELT, ETLT, HBase, MongoDB, NoSQL, Structured documents||6 Comments|
7-10 years ago, I repeatedly argued the viewpoints:
- Relational DBMS were the right choice in most cases.
- Multiple kinds of relational DBMS were needed, optimized for different kinds of use case.
- There were a variety of specialized use cases in which non-relational data models were best.
Since then, however:
- Hadoop has flourished.
- NoSQL has flourished.
- Graph DBMS have matured somewhat.
- Much of the action has shifted to machine-generated data, of which there are many kinds.
So it’s probably best to revisit all that in a somewhat organized way.
- Question: Why do policemen work in pairs?
- Answer: One to read and one to write.
A lot has happened in MongoDB technology over the past year. For starters:
- The big news in MongoDB 3.0* is the WiredTiger storage engine. The top-level claims for that are that one should “typically” expect (individual cases can of course vary greatly):
- 7-10X improvement in write performance.
- No change in read performance (which however was boosted in MongoDB 2.6).
- ~70% reduction in data size due to compression (disk only).
- ~50% reduction in index size due to compression (disk and memory both).
- MongoDB has been adding administration modules.
- A remote/cloud version came out with, if I understand correctly, MongoDB 2.6.
- An on-premise version came out with 3.0.
- They have similar features, but are expected to grow apart from each other over time. They have different names.
*Newly-released MongoDB 3.0 is what was previously going to be MongoDB 2.8. My clients at MongoDB finally decided to give a “bigger” release a new first-digit version number.
To forestall confusion, let me quickly add: Read more
|Categories: Database compression, Hadoop, Humor, In-memory DBMS, MongoDB, NoSQL, Open source, Structured documents, Sybase||9 Comments|
I hoped to write a reasonable overview of current- to medium-term future IT innovation. Yeah, right. But if we abandon any hope that this post could be comprehensive, I can at least say:
1. Back in 2011, I ranted against the term Big Data, but expressed more fondness for the V words — Volume, Velocity, Variety and Variability. That said, when it comes to data management and movement, solutions to the V problems have generally been sketched out.
- Volume has been solved. There are Hadoop installations with 100s of petabytes of data, analytic RDBMS with 10s of petabytes, general-purpose Exadata sites with petabytes, and 10s/100s of petabytes of analytic Accumulo at the NSA. Further examples abound.
- Velocity is being solved. My recent post on Hadoop-based streaming suggests how. In other use cases, velocity is addressed via memory-centric RDBMS.
- Variety and Variability have been solved. MongoDB, Cassandra and perhaps others are strong NoSQL choices. Schema-on-need is in earlier days, but may help too.
2. Even so, there’s much room for innovation around data movement and management. I’d start with:
- Product maturity is a huge issue for all the above, and will remain one for years.
- Hadoop and Spark show that application execution engines:
- Have a lot of innovation ahead of them.
- Are tightly entwined with data management, and with data movement as well.
- Hadoop is due for another refactoring, focused on both in-memory and persistent storage.
- There are many issues in storage that can affect data technologies as well, including but not limited to:
- Solid-state (flash or post-flash) vs. spinning disk.
- Networked vs. direct-attached.
- Virtualized vs. identifiable-physical.
- Graph analytics and data management are still confused.
1. A couple years ago I wrote skeptically about integrating predictive modeling and business intelligence. I’m less skeptical now.
- The predictive experimentation I wrote about over Thanksgiving calls naturally for some BI/dashboarding to monitor how it’s going.
- If you think about Nutonian’s pitch, it can be approximated as “Root-cause analysis so easy a business analyst can do it.” That could be interesting to jump to after BI has turned up anomalies. And it should be pretty easy to whip up a UI for choosing a data set and objective function to model on, since those are both things that the BI tool would know how to get to anyway.
I’ve also heard a couple of ideas about how predictive modeling can support BI. One is via my client Omer Trajman, whose startup ScalingData is still semi-stealthy, but says they’re “working at the intersection of big data and IT operations”. The idea goes something like this:
- Suppose we have lots of logs about lots of things.* Machine learning can help:
- Notice what’s an anomaly.
- Group* together things that seem to be experiencing similar anomalies.
- That can inform a BI-plus interface for a human to figure out what is happening.
Makes sense to me. (Edit: ScalingData subsequently launched, under the name Rocana.)
* The word “cluster” could have been used here in a couple of different ways, so I decided to avoid it altogether.
Finally, I’m hearing a variety of “smart ETL/data preparation” and “we recommend what columns you should join” stories. I don’t know how much machine learning there’s been in those to date, but it’s usually at least on the roadmap to make the systems (yet) smarter in the future. The end benefit is usually to facilitate BI.
2. Discussion of graph DBMS can get confusing. For example: Read more
|Categories: Business intelligence, Greenplum, Hadoop, Hortonworks, Log analysis, Neo Technology and Neo4j, Nutonian, Predictive modeling and advanced analytics, RDF and graphs, WibiData||5 Comments|
I talked with the Snowflake Computing guys Friday. For starters:
- Snowflake is offering an analytic DBMS on a SaaS (Software as a Service) basis.
- The Snowflake DBMS is built from scratch (as opposed, to for example, being based on PostgreSQL or Hadoop).
- The Snowflake DBMS is columnar and append-only, as has become common for analytic RDBMS.
- Snowflake claims excellent SQL coverage for a 1.0 product.
- Snowflake, the company, has:
- 50 people.
- A similar number of current or past users.
- 5 referenceable customers.
- 2 techie founders out of Oracle, plus Marcin Zukowski.
- Bob Muglia as CEO.
Much of the Snowflake story can be summarized as cloud/elastic/simple/cheap.*
*Excuse me — inexpensive. Companies rarely like their products to be labeled as “cheap”.
In addition to its purely relational functionality, Snowflake accepts poly-structured data. Notes on that start:
- Ingest formats are JSON, XML or AVRO for now.
- I gather that the system automagically decides which fields/attributes are sufficiently repeated to be broken out as separate columns; also, there’s a column for the documents themselves.
I don’t know enough details to judge whether I’d call that an example of schema-on-need.
A key element of Snowflake’s poly-structured data story seems to be lateral views. I’m not too clear on that concept, but I gather: Read more
|Categories: Amazon and its cloud, Cloud computing, Data mart outsourcing, Data models and architecture, Data warehousing, Market share and customer counts, Parallelization, Pricing, Software as a Service (SaaS), Structured documents||2 Comments|